| 1 Qualifies for round of 16 |  KøbenhavnF.C. København | 1 | 1 | 0 | 0 | 3 | 0 | +3 | 3 |
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| 2 Qualifies for round of 16 |  TrabzonsporTrabzonspor | 1 | 1 | 0 | 0 | 4 | 2 | +2 | 3 |
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| 3 Qualifies for round of 16 |  AtalantaAtalanta | 1 | 1 | 0 | 0 | 3 | 1 | +2 | 3 |
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| 4 Qualifies for round of 16 |  MjällbyMjällby AIF | 1 | 1 | 0 | 0 | 2 | 0 | +2 | 3 |
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| 5 Qualifies for round of 16 |  Sint-TruidenseSint-Truidense | 1 | 1 | 0 | 0 | 2 | 0 | +2 | 3 |
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| 6 Qualifies for round of 16 |  FreiburgSC Freiburg | 1 | 1 | 0 | 0 | 3 | 2 | +1 | 3 |
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| 7 Qualifies for round of 16 |  FC LuganoFC Lugano | 1 | 1 | 0 | 0 | 3 | 2 | +1 | 3 |
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| 8 Qualifies for round of 16 |  MonacoAS Monaco | 1 | 1 | 0 | 0 | 2 | 1 | +1 | 3 |
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| 9 Knockout phase playoffs - seeded |  SK BrannSK Brann | 1 | 1 | 0 | 0 | 2 | 1 | +1 | 3 |
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| 10 Knockout phase playoffs - seeded |  Hajduk SplitHajduk Split | 1 | 1 | 0 | 0 | 2 | 1 | +1 | 3 |
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| 11 Knockout phase playoffs - seeded |  PanathinaikosPanathinaikos | 1 | 1 | 0 | 0 | 2 | 1 | +1 | 3 |
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| 12 Knockout phase playoffs - seeded |  KAA GentKAA Gent | 1 | 1 | 0 | 0 | 1 | 0 | +1 | 3 |
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| 13 Knockout phase playoffs - seeded |  FC TwenteFC Twente | 1 | 1 | 0 | 0 | 1 | 0 | +1 | 3 |
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| 14 Knockout phase playoffs - seeded |  GetafeGetafe | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 |
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| 15 Knockout phase playoffs - seeded |  Kairat AlmatyKairat Almaty | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 |
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| 16 Knockout phase playoffs - seeded |  MidtjyllandFC Midtjylland | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 |
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| 17 Knockout phase playoffs - unseeded |  NordsjællandFC Nordsjælland | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 |
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| 18 Knockout phase playoffs - unseeded |  EgnatiaEgnatia | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 |
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| 19 Knockout phase playoffs - unseeded |  HeartsHeart of Midlothian | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 |
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| 20 Knockout phase playoffs - unseeded |  Riga FCRiga FC | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 |
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| 21 Knockout phase playoffs - unseeded |  CSU CraiovaCSU Craiova | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 |
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| 22 Knockout phase playoffs - unseeded |  BrightonBrighton & Hove Albion | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
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| 23 Knockout phase playoffs - unseeded |  Kauno ZalgirisKauno Zalgiris | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
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| 24 Knockout phase playoffs - unseeded |  JablonecJablonec | 1 | 0 | 0 | 1 | 2 | 3 | -1 | 0 |
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| 25 Eliminated |  Red StarRed Star Belgrade | 1 | 0 | 0 | 1 | 2 | 3 | -1 | 0 |
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| 26 Eliminated |  AjaxAjax Amsterdam | 1 | 0 | 0 | 1 | 1 | 2 | -1 | 0 |
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| 27 Eliminated |  BoracBorac Banja Luka | 1 | 0 | 0 | 1 | 1 | 2 | -1 | 0 |
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| 28 Eliminated |  Red ImpsLincoln Red Imps | 1 | 0 | 0 | 1 | 1 | 2 | -1 | 0 |
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| 29 Eliminated |  CSKA SofiaCSKA Sofia | 1 | 0 | 0 | 1 | 1 | 2 | -1 | 0 |
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| 30 Eliminated |  AGFAGF | 1 | 0 | 0 | 1 | 0 | 1 | -1 | 0 |
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| 31 Eliminated |  FC ThunFC Thun | 1 | 0 | 0 | 1 | 0 | 1 | -1 | 0 |
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| 32 Eliminated |  KuPS KuopioKuPS Kuopio | 1 | 0 | 0 | 1 | 2 | 4 | -2 | 0 |
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| 33 Eliminated |  PafosPafos | 1 | 0 | 0 | 1 | 1 | 3 | -2 | 0 |
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| 34 Eliminated |  Iberia 1999Iberia 1999 | 1 | 0 | 0 | 1 | 0 | 2 | -2 | 0 |
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| 35 Eliminated |  Inter D'EscaldesInter D'Escaldes | 1 | 0 | 0 | 1 | 0 | 2 | -2 | 0 |
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| 36 Eliminated |  BragaBraga | 1 | 0 | 0 | 1 | 0 | 3 | -3 | 0 |
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